SRX129079
GSM894071: U87 H3K4ME3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
Glioblastoma
chip antibody
H3K4me3
cell type
U87

Sequenced DNA Library

library_name
GSM894071: U87_H3K4ME3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30563853
Reads aligned (%)
94.1
Duplicates removed (%)
28.0
Number of peaks
36283 (qval < 1E-05)

hg19

Number of total reads
30563853
Reads aligned (%)
94.0
Duplicates removed (%)
28.2
Number of peaks
36093 (qval < 1E-05)

Base call quality data from DBCLS SRA