Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Esr1

Cell type

Cell type Class
Uterus
Cell type
Uterus
MeSH Description
The hollow thick-walled muscular organ in the female PELVIS. It consists of the fundus (the body) which is the site of EMBRYO IMPLANTATION and FETAL DEVELOPMENT. Beyond the isthmus at the perineal end of fundus, is CERVIX UTERI (the neck) opening into VAGINA. Beyond the isthmi at the upper abdominal end of fundus, are the FALLOPIAN TUBES.

Attributes by original data submitter

Sample

source_name
uterus
strain
C57BL/6J
tissue
uterus
agent
estradiol
chip antibody
ER alpha (sc-542, lot# D1310, Santa Cruz)

Sequenced DNA Library

library_name
GSM894054: WT 1h E2 ER alpha ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
32117033
Reads aligned (%)
92.8
Duplicates removed (%)
20.8
Number of peaks
39461 (qval < 1E-05)

mm9

Number of total reads
32117033
Reads aligned (%)
92.7
Duplicates removed (%)
20.8
Number of peaks
39471 (qval < 1E-05)

Base call quality data from DBCLS SRA