Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RUNX1
wikigenes
PDBj
CellType: Jurkat (Clone E6-1)
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX128783
GSM722170: RUNX1 ChIP-seq in Jurkat
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RUNX1
Cell type
Cell type Class
Blood
Cell type
Jurkat (Clone E6-1)
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic
Attributes by original data submitter
Sample
source_name
03232009_3140UAAXX_B6
chip antibody
RUNX1
antibody catalog number
Santa Cruz SC-8563
cell line
Jurkat E6-1
cell number
10 million
Sequenced DNA Library
library_name
GSM722170: RUNX1 ChIP-seq in Jurkat
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
8098692
Reads aligned (%)
85.6
Duplicates removed (%)
33.8
Number of peaks
2737 (qval < 1E-05)
hg19
Number of total reads
8098692
Reads aligned (%)
85.0
Duplicates removed (%)
34.6
Number of peaks
2810 (qval < 1E-05)
Base call quality data from
DBCLS SRA