Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
Jurkat (Clone E6-1)
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
03232009_3140UAAXX_B6
chip antibody
RUNX1
antibody catalog number
Santa Cruz SC-8563
cell line
Jurkat E6-1
cell number
10 million

Sequenced DNA Library

library_name
GSM722170: RUNX1 ChIP-seq in Jurkat
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
8098692
Reads aligned (%)
55.6
Duplicates removed (%)
34.6
Number of peaks
2810 (qval < 1E-05)

hg38

Number of total reads
8098692
Reads aligned (%)
56.7
Duplicates removed (%)
33.8
Number of peaks
2737 (qval < 1E-05)

Base call quality data from DBCLS SRA