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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: Treg
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1286402
GSM1893232: aTreg D60 batch3; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Blood
Cell type
Treg
NA
NA
Attributes by original data submitter
Sample
source_name
CD4+ T cells
antibody
H3K27ac, Abcam, ab4729
cell source
Primary Human T cells isolated from buffy coat preparations and sorted
cell type
activated Treg cells (CD4+ CD25hi CD45RO+) from donor 60
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted by ChIP-seq Standard Illumina library prep
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
39035632
Reads aligned (%)
92.9
Duplicates removed (%)
3.4
Number of peaks
2212 (qval < 1E-05)
hg19
Number of total reads
39035632
Reads aligned (%)
92.1
Duplicates removed (%)
3.9
Number of peaks
2098 (qval < 1E-05)
Base call quality data from
DBCLS SRA