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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
SRX1286392
GSM1893222: rTreg rep2 batch2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
source_name
CD4+ T cells
antibody
H3K27ac, Abcam, ab4729
cell source
Primary Mouse T cells isolated ex-vivo and sorted
cell type
resting CD4+ Regulatory T cells
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted by ChIP-seq Standard Illumina library prep
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
21615730
Reads aligned (%)
87.8
Duplicates removed (%)
6.5
Number of peaks
1730 (qval < 1E-05)
mm9
Number of total reads
21615730
Reads aligned (%)
87.8
Duplicates removed (%)
6.6
Number of peaks
1726 (qval < 1E-05)
Base call quality data from
DBCLS SRA