SRX1286385
GSM1893215: GFPKO rep1 batch2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
antibody
H3K27ac, Abcam, ab4729
cell source
Primary Mouse T cells isolated ex-vivo and sorted
cell type
GFP+ CD4+ T cells from Foxp3GFPKO/WT mice

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted by ChIP-seq Standard Illumina library prep

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22425211
Reads aligned (%)
91.9
Duplicates removed (%)
24.7
Number of peaks
6603 (qval < 1E-05)

mm9

Number of total reads
22425211
Reads aligned (%)
91.7
Duplicates removed (%)
24.7
Number of peaks
6607 (qval < 1E-05)

Base call quality data from DBCLS SRA