SRX128217
GSM892275: input ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ZHBTc4 F-Oct4_input_IgG_control
cell line
ZHBTc4 F-Oct4
cell type
embryonic stem cell
chip-seq antibody
anti-Flag antibody
chip-seq antibody vendor
Sigma

Sequenced DNA Library

library_name
GSM892275: input_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25261455
Reads aligned (%)
2.2
Duplicates removed (%)
73.7
Number of peaks
93 (qval < 1E-05)

mm9

Number of total reads
25261455
Reads aligned (%)
2.2
Duplicates removed (%)
73.9
Number of peaks
90 (qval < 1E-05)

Base call quality data from DBCLS SRA