Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
XRN2

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa, Xrn2 ChIP
cell line
HeLa
shRNA
none
chip antibody
rabbit anti-Xrn2
growth protocol
Cells were grown in DMEM 10% FCS.

Sequenced DNA Library

library_name
GSM891235: Xrn2 ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
18460950
Reads aligned (%)
79.8
Duplicates removed (%)
5.8
Number of peaks
482 (qval < 1E-05)

hg38

Number of total reads
18460950
Reads aligned (%)
80.8
Duplicates removed (%)
5.6
Number of peaks
509 (qval < 1E-05)

Base call quality data from DBCLS SRA