Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TTF2

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa, TTF2 ChIP
cell line
HeLa
shRNA
none
chip antibody
sheep anti-TTF2
growth protocol
Cells were grown in DMEM 10% FCS.

Sequenced DNA Library

library_name
GSM891233: TTF2 ChIP-Seq (antibody 1)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
22291303
Reads aligned (%)
38.3
Duplicates removed (%)
19.9
Number of peaks
1495 (qval < 1E-05)

hg38

Number of total reads
22291303
Reads aligned (%)
38.6
Duplicates removed (%)
19.6
Number of peaks
1530 (qval < 1E-05)

Base call quality data from DBCLS SRA