SRX128190
GSM891232: Hela input chromatin; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa, input
cell line
HeLa
shRNA
none
chip antibody
none
growth protocol
Cells were grown in DMEM 10% FCS.

Sequenced DNA Library

library_name
GSM891232: Hela input chromatin
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31751767
Reads aligned (%)
95.9
Duplicates removed (%)
2.4
Number of peaks
755 (qval < 1E-05)

hg19

Number of total reads
31751767
Reads aligned (%)
95.2
Duplicates removed (%)
3.5
Number of peaks
951 (qval < 1E-05)

Base call quality data from DBCLS SRA