Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7
cell line
MCF-7
source
human breast adenocarcinoma
chip antibody
no antibody control

Sequenced DNA Library

library_name
GSM889769: control IP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
18355903
Reads aligned (%)
58.4
Duplicates removed (%)
38.9
Number of peaks
2766 (qval < 1E-05)

hg19

Number of total reads
18355903
Reads aligned (%)
57.9
Duplicates removed (%)
40.5
Number of peaks
3122 (qval < 1E-05)

Base call quality data from DBCLS SRA