Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2C

Cell type

Cell type Class
Breast
Cell type
BT-474
Primary Tissue
Breast
Site of Extraction
Soft Tissue
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
BT-474, TFAP2C ChIP
cell line
BT-474
chip antibody
TFAP2C monoclonal antibody
antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM889426: BT-474 TFAP2C
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
24537501
Reads aligned (%)
83.0
Duplicates removed (%)
11.1
Number of peaks
64434 (qval < 1E-05)

hg38

Number of total reads
24537501
Reads aligned (%)
83.5
Duplicates removed (%)
10.9
Number of peaks
64472 (qval < 1E-05)

Base call quality data from DBCLS SRA