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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: 2-4h embryos
ATCC
MeSH
RIKEN BRC
SRX127434
GSM886797: dme gd input 2to4h 1; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
input DNA from gd7 embryos expressing the transgene twiBAC-Yellow
tissue
whole gd7 embryos
tissue type
dorsal ectoderm
genotype
maternally gd7/gd7 mutants and zygotically expressing the transgene twiBAC-Yellow
chip antibody
none (input)
Sequenced DNA Library
library_name
GSM886797: dme_gd_input_2to4h_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
38741446
Reads aligned (%)
78.0
Duplicates removed (%)
3.8
Number of peaks
3092 (qval < 1E-05)
dm3
Number of total reads
38741446
Reads aligned (%)
78.3
Duplicates removed (%)
2.8
Number of peaks
0 (qval < 1E-05)
Base call quality data from
DBCLS SRA