SRX127369
GSM886503: 2-HPC input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Hematopoietic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
HPC input DNA
strain
129-M2rtTA
cell type
mouse hematopoietic progenitor cells
passage
0

Sequenced DNA Library

library_name
GSM886503: 2-HPC input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34549812
Reads aligned (%)
98.8
Duplicates removed (%)
8.3
Number of peaks
263 (qval < 1E-05)

mm9

Number of total reads
34549812
Reads aligned (%)
98.6
Duplicates removed (%)
8.3
Number of peaks
265 (qval < 1E-05)

Base call quality data from DBCLS SRA