Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF input DNA
strain
129-M2rtTA
cell type
mouse embryonic fibroblast
passage
1

Sequenced DNA Library

library_name
GSM886500: 1-MEF input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
40119353
Reads aligned (%)
98.8
Duplicates removed (%)
7.8
Number of peaks
262 (qval < 1E-05)

mm9

Number of total reads
40119353
Reads aligned (%)
98.7
Duplicates removed (%)
7.8
Number of peaks
269 (qval < 1E-05)

Base call quality data from DBCLS SRA