SRX127362
GSM886496: 1-MEF-iPSC-42 input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
MEF-iPSC input DNA
strain
129-M2rtTA
cell type
MEF-derived induced pluripotent stem cells
passage
10-12

Sequenced DNA Library

library_name
GSM886496: 1-MEF-iPSC-42 input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39203661
Reads aligned (%)
98.0
Duplicates removed (%)
7.4
Number of peaks
345 (qval < 1E-05)

mm9

Number of total reads
39203661
Reads aligned (%)
97.8
Duplicates removed (%)
7.4
Number of peaks
353 (qval < 1E-05)

Base call quality data from DBCLS SRA