Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
HPC-iPSC input DNA
strain
129-M2rtTA
cell type
HPC-derived induced pluripotent stem cells
passage
10-12

Sequenced DNA Library

library_name
GSM886494: 2-HPC-iPSC-16 input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
28749077
Reads aligned (%)
98.9
Duplicates removed (%)
6.9
Number of peaks
285 (qval < 1E-05)

mm9

Number of total reads
28749077
Reads aligned (%)
98.8
Duplicates removed (%)
7.0
Number of peaks
290 (qval < 1E-05)

Base call quality data from DBCLS SRA