Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF breast cancer cells
cell line
MCF7
cell type
ERalpha-positive breast cancer cells
chip antibody
ERalpha (H-20, Santa Cruz)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction ChIP-seq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
4352509
Reads aligned (%)
54.1
Duplicates removed (%)
45.0
Number of peaks
27 (qval < 1E-05)

hg38

Number of total reads
4352509
Reads aligned (%)
55.1
Duplicates removed (%)
44.3
Number of peaks
29 (qval < 1E-05)

Base call quality data from DBCLS SRA