SRX1272812
GSM1890760: MCF7 E2 Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF breast cancer cells
cell line
MCF7
cell type
ERalpha-positive breast cancer cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction ChIP-seq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
3677501
Reads aligned (%)
98.8
Duplicates removed (%)
44.0
Number of peaks
15 (qval < 1E-05)

hg19

Number of total reads
3677501
Reads aligned (%)
98.3
Duplicates removed (%)
45.1
Number of peaks
13 (qval < 1E-05)

Base call quality data from DBCLS SRA