Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Kidney

Cell type

Caki-1

Primary Tissue

Kidney

Tissue Diagnosis

Adenocarcinoma Clear Cell

Sample

source_name

caki-1 cell line

tissue

kidney; Derived from metastatic site - skin

cell line

caki-1

chip antibody

H3K4me1

chip antibody provider

Abcam

chip antibody catalog

ab8895

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

CHIP followed by phenol/chloroform extraction and EtOH precipitation. TruSeq ChIP Sample Prep Kit, Illumina

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

62484890

Reads aligned (%)

98.7

Duplicates removed (%)

0.9

Number of peaks

1255 (qval < 1E-05)

hg19

Number of total reads

62484890

Reads aligned (%)

98.1

Duplicates removed (%)

1.1

Number of peaks

653 (qval < 1E-05)