Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Kidney

Cell type

Caki-1

Primary Tissue

Kidney

Tissue Diagnosis

Adenocarcinoma Clear Cell

Sample

source_name

caki-1 cell line

tissue

kidney; Derived from metastatic site - skin

cell line

caki-1

chip antibody

H3K9me3

chip antibody provider

Abcam

chip antibody catalog

ab88981

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

CHIP followed by phenol/chloroform extraction and EtOH precipitation. TruSeq ChIP Sample Prep Kit, Illumina

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

94196663

Reads aligned (%)

94.0

Duplicates removed (%)

2.7

Number of peaks

9801 (qval < 1E-05)

hg19

Number of total reads

94196663

Reads aligned (%)

91.1

Duplicates removed (%)

3.4

Number of peaks

6076 (qval < 1E-05)