Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Kidney
Cell type
Caki-1
Primary Tissue
Kidney
Tissue Diagnosis
Adenocarcinoma Clear Cell

Attributes by original data submitter

Sample

source_name
caki-1 cell line
tissue
kidney; Derived from metastatic site - skin
cell line
caki-1
chip antibody
H3K9me3
chip antibody provider
Millipore
chip antibody catalog
07-442

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
CHIP followed by phenol/chloroform extraction and EtOH precipitation. TruSeq ChIP Sample Prep Kit, Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
46156639
Reads aligned (%)
89.0
Duplicates removed (%)
16.5
Number of peaks
5332 (qval < 1E-05)

hg19

Number of total reads
46156639
Reads aligned (%)
86.4
Duplicates removed (%)
17.0
Number of peaks
2668 (qval < 1E-05)

Base call quality data from DBCLS SRA