Antigen

Antigen Class

TFs and others

Antigen

KDM5C

Cell type

Cell type Class

Kidney

Cell type

Caki-1

Primary Tissue

Kidney

Tissue Diagnosis

Adenocarcinoma Clear Cell

Sample

source_name

caki-1 cell line

tissue

kidney; Derived from metastatic site - skin

cell line

caki-1

chip antibody

KDM5C

chip antibody provider

Bethyl

chip antibody catalog

A301-034

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

CHIP followed by phenol/chloroform extraction and EtOH precipitation. TruSeq ChIP Sample Prep Kit, Illumina

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

19522532

Reads aligned (%)

89.3

Duplicates removed (%)

10.4

Number of peaks

1924 (qval < 1E-05)

hg19

Number of total reads

19522532

Reads aligned (%)

87.8

Duplicates removed (%)

10.7

Number of peaks

865 (qval < 1E-05)