Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5C

Cell type

Cell type Class
Kidney
Cell type
Caki-1
Primary Tissue
Kidney
Tissue Diagnosis
Adenocarcinoma Clear Cell

Attributes by original data submitter

Sample

source_name
caki-1 cell line
tissue
kidney; Derived from metastatic site - skin
cell line
caki-1
chip antibody
KDM5C
chip antibody provider
Abcam
chip antibody catalog
ab72152

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
CHIP followed by phenol/chloroform extraction and EtOH precipitation. TruSeq ChIP Sample Prep Kit, Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
23796641
Reads aligned (%)
172.6
Duplicates removed (%)
7.4
Number of peaks
805 (qval < 1E-05)

hg38

Number of total reads
23796641
Reads aligned (%)
175.5
Duplicates removed (%)
7.1
Number of peaks
1263 (qval < 1E-05)

Base call quality data from DBCLS SRA