Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMC3

Cell type

Cell type Class
Blood
Cell type
TF-1
Primary Tissue
Blood
Tissue Diagnosis
Erythroleukemia

Attributes by original data submitter

Sample

source_name
TF-1-RAD21 Q592* (SMC3 #1)
cell line
TF-1
cell type
Erythroleukemia Cell Line
transduction
TF-1-RAD21 Q592* (SMC3 #1)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
58948669
Reads aligned (%)
84.1
Duplicates removed (%)
13.8
Number of peaks
1073 (qval < 1E-05)

hg38

Number of total reads
58948669
Reads aligned (%)
85.6
Duplicates removed (%)
12.8
Number of peaks
1301 (qval < 1E-05)

Base call quality data from DBCLS SRA