SRX125275
GSM883648: input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neural progenitor cells
cell type
ES-derived neural progenitor cells
strain
129SvJae x C57BL/6
gender
male
chip antibody
none

Sequenced DNA Library

library_name
GSM883648: input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
74775995
Reads aligned (%)
25.7
Duplicates removed (%)
5.4
Number of peaks
2049 (qval < 1E-05)

mm9

Number of total reads
74775995
Reads aligned (%)
25.6
Duplicates removed (%)
5.9
Number of peaks
1891 (qval < 1E-05)

Base call quality data from DBCLS SRA