SRX124716
GSM883692: Crypt3 H3K4me3 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Digestive tract
Cell type
Crypt
NA
NA

Attributes by original data submitter

Sample

source_name
Normal Colon Crypt_H3K4me3_ChIPSeq
cell type
Normal Colon Crypt
chip antibody
H3K4me3
chip antibody vendor
Active Motif

Sequenced DNA Library

library_name
GSM883692: Crypt3_H3K4me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48975219
Reads aligned (%)
79.9
Duplicates removed (%)
55.0
Number of peaks
31097 (qval < 1E-05)

hg19

Number of total reads
48975219
Reads aligned (%)
79.7
Duplicates removed (%)
55.6
Number of peaks
30939 (qval < 1E-05)

Base call quality data from DBCLS SRA