Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Digestive tract
Cell type
Crypt
NA
NA

Attributes by original data submitter

Sample

source_name
Normal Colon Crypt_H3K4me3_ChIPSeq
cell type
Normal Colon Crypt
chip antibody
H3K4me3
chip antibody vendor
Active Motif

Sequenced DNA Library

library_name
GSM883691: Crypt1_H3K4me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
44684593
Reads aligned (%)
83.8
Duplicates removed (%)
36.4
Number of peaks
36866 (qval < 1E-05)

hg19

Number of total reads
44684593
Reads aligned (%)
83.7
Duplicates removed (%)
36.7
Number of peaks
36902 (qval < 1E-05)

Base call quality data from DBCLS SRA