Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Digestive tract
Cell type
Colon cancer
NA
NA

Attributes by original data submitter

Sample

source_name
Colon cancer_H3K4me3_ChIPSeq
cell type
Colon Cancer
chip antibody
H3K4me3
chip antibody vendor
Active Motif

Sequenced DNA Library

library_name
GSM883688: V503_H3K4me3_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
49947198
Reads aligned (%)
79.6
Duplicates removed (%)
43.6
Number of peaks
39203 (qval < 1E-05)

hg19

Number of total reads
49947198
Reads aligned (%)
79.4
Duplicates removed (%)
43.8
Number of peaks
38992 (qval < 1E-05)

Base call quality data from DBCLS SRA