SRX124690
GSM883666: V400 input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Colon cancer
NA
NA

Attributes by original data submitter

Sample

source_name
Colon cancer_input DNA
cell type
Colon Cancer

Sequenced DNA Library

library_name
GSM883666: V400_input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27714554
Reads aligned (%)
97.7
Duplicates removed (%)
1.7
Number of peaks
727 (qval < 1E-05)

hg19

Number of total reads
27714554
Reads aligned (%)
96.9
Duplicates removed (%)
3.2
Number of peaks
1091 (qval < 1E-05)

Base call quality data from DBCLS SRA