SRX124684
GSM883660: V8 H3K4me1 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Digestive tract
Cell type
Colon cancer
NA
NA

Attributes by original data submitter

Sample

source_name
Colon cancer_H3K4me1_ChIPSeq
cell type
Colon Cancer
chip antibody
H3K4me1
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM883660: V8_H3K4me1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10568059
Reads aligned (%)
88.2
Duplicates removed (%)
0.7
Number of peaks
681 (qval < 1E-05)

hg19

Number of total reads
10568059
Reads aligned (%)
87.9
Duplicates removed (%)
0.9
Number of peaks
722 (qval < 1E-05)

Base call quality data from DBCLS SRA