SRX124678
GSM883654: V429 H3K4me1 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Digestive tract
Cell type
Colon cancer
NA
NA

Attributes by original data submitter

Sample

source_name
Colon cancer_H3K4me1_ChIPSeq
cell type
Colon Cancer
chip antibody
H3K4me1
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM883654: V429_H3K4me1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40312350
Reads aligned (%)
92.6
Duplicates removed (%)
2.8
Number of peaks
10388 (qval < 1E-05)

hg19

Number of total reads
40312350
Reads aligned (%)
92.2
Duplicates removed (%)
3.1
Number of peaks
9967 (qval < 1E-05)

Base call quality data from DBCLS SRA