SRX124481
GSM881222: 4-7hr PolII ChIP-Seq ChIP Oregon-R strain Replicate 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryo
Cell type
4-7h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
4-7hr PolII ChIP-Seq ChIP Oregon-R strain Replicate 2
strain
Oregon-R(official name : Oregon-R-modENCODE genotype : wild type )
developmental stage
Embryo 4-7h
genotype
wild type

Sequenced DNA Library

library_name
GSM881222: 4-7hr PolII ChIP-Seq ChIP Oregon-R strain Replicate 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
6871525
Reads aligned (%)
95.9
Duplicates removed (%)
13.8
Number of peaks
2441 (qval < 1E-05)

dm3

Number of total reads
6871525
Reads aligned (%)
96.2
Duplicates removed (%)
12.0
Number of peaks
2413 (qval < 1E-05)

Base call quality data from DBCLS SRA