Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma

Attributes by original data submitter

Sample

source_name
embryonic carcinoma NCCIT
cell type
pluripotent cells
ChIP
none, control, input

Sequenced DNA Library

library_name
GSM881713: N-input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
49738545
Reads aligned (%)
89.9
Duplicates removed (%)
2.6
Number of peaks
867 (qval < 1E-05)

hg19

Number of total reads
49738545
Reads aligned (%)
89.2
Duplicates removed (%)
3.8
Number of peaks
1020 (qval < 1E-05)

Base call quality data from DBCLS SRA