SRX123445
GSM881712: SNF5overexpression-OCT4 ChIP seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
POU5F1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma

Attributes by original data submitter

Sample

source_name
embryonic carcinoma NCCIT
cell type
SNF5 overexpressed cells
ChIP
OCT4A
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM881712: SNF5overexpression-OCT4 ChIP seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36397468
Reads aligned (%)
89.6
Duplicates removed (%)
19.1
Number of peaks
11573 (qval < 1E-05)

hg19

Number of total reads
36397468
Reads aligned (%)
89.0
Duplicates removed (%)
20.3
Number of peaks
11679 (qval < 1E-05)

Base call quality data from DBCLS SRA