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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SMARCB1
wikigenes
PDBj
CellType: NCCIT
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX123444
GSM881711: SNF5overexpression-SNF5 ChIP seq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SMARCB1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma
Attributes by original data submitter
Sample
source_name
embryonic carcinoma NCCIT
cell type
SNF5 overexpressed cells
ChIP
SNF5
antibody vendor
Abcam
Sequenced DNA Library
library_name
GSM881711: SNF5overexpression-SNF5 ChIP seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
50446370
Reads aligned (%)
87.6
Duplicates removed (%)
34.0
Number of peaks
1266 (qval < 1E-05)
hg19
Number of total reads
50446370
Reads aligned (%)
87.0
Duplicates removed (%)
35.3
Number of peaks
1731 (qval < 1E-05)
Base call quality data from
DBCLS SRA