Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCB1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NCCIT
Primary Tissue
Testis
Tissue Diagnosis
Teratoma

Attributes by original data submitter

Sample

source_name
embryonic carcinoma NCCIT
cell type
SNF5 overexpressed cells
ChIP
SNF5
antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM881711: SNF5overexpression-SNF5 ChIP seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
50446370
Reads aligned (%)
56.4
Duplicates removed (%)
35.3
Number of peaks
1731 (qval < 1E-05)

hg38

Number of total reads
50446370
Reads aligned (%)
57.8
Duplicates removed (%)
34.0
Number of peaks
1266 (qval < 1E-05)

Base call quality data from DBCLS SRA