Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Atf4

Cell type

Cell type Class
Blood
Cell type
Dendritic Cells
MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by original data submitter

Sample

source_name
bone marrow
cell type
bone marrow-derived dendritic cells
strain
C57BL/6
chip antibody
Atf4
treatment
LPS
time
120 min
chip antibody manufacturer 1
Abcam
chip antibody catalog number 1
ab28830-100
chip antibody manufacturer 2
Santa Cruz
chip antibody catalog number 2
sc-200

Sequenced DNA Library

library_name
GSM881130: ChIP-Seq of Atf4 120 min post LPS stimulation
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

mm10

Number of total reads
3694400
Reads aligned (%)
83.3
Duplicates removed (%)
11.0
Number of peaks
14493 (qval < 1E-05)

mm9

Number of total reads
3694400
Reads aligned (%)
83.2
Duplicates removed (%)
13.6
Number of peaks
14480 (qval < 1E-05)

Base call quality data from DBCLS SRA