Curated Sample Data


Genome
mm9
Antigen Class
TFs and others
Antigen
Atf3
Cell type Class
Blood
Cell type
Dendritic Cells

Cell type information


MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by Original Data Submitter


source_name
bone marrow
cell type
bone marrow-derived dendritic cells
strain
C57BL/6
chip antibody
Atf3
treatment
LPS
time
120 min
chip antibody manufacturer 1
Santa Cruz
chip antibody catalog number 1
sc-188
chip antibody manufacturer 2
Abcam
chip antibody catalog number 2
ab70005-100

Metadata from Sequence Read Archive

Library Description


library_name
GSM881127: ChIP-Seq of Atf3 120 min post LPS stimulation
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina HiSeq 1000

External Database Query

Logs in read processing pipeline


Number of total reads
9549445
Reads aligned (%)
19.6
Duplicates removed (%)
3.7
Number of peaks
130 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA