Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Dendritic Cells
MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by original data submitter

Sample

source_name
bone marrow
cell type
bone marrow-derived dendritic cells
strain
C57BL/6
chip antibody
none
treatment
LPS
time
60 min
chip antibody manufacturer
none
chip antibody catalog number
none

Sequenced DNA Library

library_name
GSM881125: ChIP-Seq of WCE 60 min post LPS stimulation
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

mm10

Number of total reads
30871633
Reads aligned (%)
98.0
Duplicates removed (%)
12.0
Number of peaks
566 (qval < 1E-05)

mm9

Number of total reads
30871633
Reads aligned (%)
97.8
Duplicates removed (%)
12.1
Number of peaks
636 (qval < 1E-05)

Base call quality data from DBCLS SRA