Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
MCF10A breast
cell line
MCF10A
cell type
Human normal breast epithelial cells
passages
5
chip-seq antibody
BRD4 N-terminal antibody kindly provided by Prof. Cheng Ming Chiang (4 µl used)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
19983077
Reads aligned (%)
72.1
Duplicates removed (%)
8.5
Number of peaks
5117 (qval < 1E-05)

hg38

Number of total reads
19983077
Reads aligned (%)
73.7
Duplicates removed (%)
7.2
Number of peaks
5115 (qval < 1E-05)

Base call quality data from DBCLS SRA