Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Irf1

Cell type

Cell type Class
Blood
Cell type
Dendritic Cells
MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by original data submitter

Sample

source_name
bone marrow
cell type
bone marrow-derived dendritic cells
strain
C57BL/6
chip antibody
Irf1
treatment
LPS
time
120 min
chip antibody manufacturer 1
Abcam
chip antibody catalog number 1
ab52520
chip antibody manufacturer 2
Santa Cruz
chip antibody catalog number 2
sc-640

Sequenced DNA Library

library_name
GSM881073: ChIP-Seq of Irf1 120 min post LPS stimulation
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

mm10

Number of total reads
9716314
Reads aligned (%)
96.0
Duplicates removed (%)
11.1
Number of peaks
5359 (qval < 1E-05)

mm9

Number of total reads
9716314
Reads aligned (%)
95.8
Duplicates removed (%)
11.3
Number of peaks
5355 (qval < 1E-05)

Base call quality data from DBCLS SRA