Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hif1a

Cell type

Cell type Class
Blood
Cell type
Dendritic Cells
MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by original data submitter

Sample

source_name
bone marrow
cell type
bone marrow-derived dendritic cells
strain
C57BL/6
chip antibody
Hif1a
treatment
LPS
time
30 min
chip antibody manufacturer
Bethyl
chip antibody catalog number
NB100-134

Sequenced DNA Library

library_name
GSM881070: ChIP-Seq of Hif1a 30 min post LPS stimulation
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

mm10

Number of total reads
15125284
Reads aligned (%)
71.9
Duplicates removed (%)
16.9
Number of peaks
490 (qval < 1E-05)

mm9

Number of total reads
15125284
Reads aligned (%)
71.7
Duplicates removed (%)
17.1
Number of peaks
565 (qval < 1E-05)

Base call quality data from DBCLS SRA