Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
Dendritic Cells
MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by original data submitter

Sample

source_name
bone marrow
cell type
bone marrow-derived dendritic cells
strain
C57BL/6
chip antibody
Ctcf
treatment
LPS
time
60 min
chip antibody manufacturer
Upstate
chip antibody catalog number
07-729

Sequenced DNA Library

library_name
GSM881055: ChIP-Seq of Ctcf 60 min post LPS stimulation
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

mm10

Number of total reads
9347484
Reads aligned (%)
60.9
Duplicates removed (%)
13.3
Number of peaks
20474 (qval < 1E-05)

mm9

Number of total reads
9347484
Reads aligned (%)
60.7
Duplicates removed (%)
13.7
Number of peaks
20459 (qval < 1E-05)

Base call quality data from DBCLS SRA