Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Epidermis
Cell type
Fetal skin
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Cell Culture
CELL_TYPE
Fibroblasts, Fetal Skin, Back
MARKERS
NA
CULTURE_CONDITIONS
None
DONOR_ID
H-24218
DONOR_AGE
day 96
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
NA
PASSAGE_IF_EXPANDED
short term
sample_term_id
CL_0002620

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
53682211
Reads aligned (%)
80.9
Duplicates removed (%)
39.4
Number of peaks
120986 (qval < 1E-05)

hg19

Number of total reads
53682211
Reads aligned (%)
80.4
Duplicates removed (%)
40.2
Number of peaks
120442 (qval < 1E-05)

Base call quality data from DBCLS SRA