Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Gonad

Cell type

Testis

MeSH Description

The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Sample

MOLECULE

genomic DNA

DISEASE

None

BIOMATERIAL_PROVIDER

University of Washington, Congenital Defects Lab. Ian Glass

BIOMATERIAL_TYPE

Primary Tissue

TISSUE_TYPE

Fetal Testes

TISSUE_DEPOT

UW

COLLECTION_METHOD

fetal

DONOR_ID

H24198_H23640_H24042

DONOR_AGE

pool

DONOR_HEALTH_STATUS

NA

DONOR_SEX

male

DONOR_ETHNICITY

NA

sample_term_id

UBERON_0000473

Sequenced DNA Library

library_name

DS18942

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

33963428

Reads aligned (%)

91.5

Duplicates removed (%)

8.7

Number of peaks

50865 (qval < 1E-05)

hg19

Number of total reads

33963428

Reads aligned (%)

90.9

Duplicates removed (%)

10.3

Number of peaks

50849 (qval < 1E-05)