Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was preapred from whole cell lysates of cross-linked cells. Lysates were sonicated and chromatin complexes were isolated with antibodies coupled to magnetic beads. Libraries were prepared according to Rubicon Genomics THRUPlex kit with minor modifications.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
72807607
Reads aligned (%)
81.3
Duplicates removed (%)
18.3
Number of peaks
821 (qval < 1E-05)

mm9

Number of total reads
72807607
Reads aligned (%)
81.1
Duplicates removed (%)
18.3
Number of peaks
925 (qval < 1E-05)

Base call quality data from DBCLS SRA