ChIP-Atlas: SRX120297

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Prostate
Cell type: LNCAP
Primary Tissue: Prostate
Tissue Diagnosis: Carcinoma

Attributes by original data submitter

Sample

source_name: Prostate Cancer Cell Line
antibody: none
cell line: LNCap
treatment: none

Sequenced DNA Library

library_name: GSM875815: LNCaP_Input_ChIPSeq
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 28625610
Reads aligned (%): 98.2
Duplicates removed (%): 33.1
Number of peaks: 327 (qval < 1E-05)

hg19

Number of total reads: 28625610
Reads aligned (%): 97.8
Duplicates removed (%): 33.7
Number of peaks: 313 (qval < 1E-05)

Base call quality data from DBCLS SRA