SRX120224
GSM876642: Rag2.Pro-B.input [8149.8.301DTAAXX]; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Pro-B
genotype/variation
Rag2(–/–)
strain
C57BL/6
chip antibody
NA
extraction method
4-5 day culture (Cd19+ cells from Bone marrow)
tissue
Bone Marrow

Sequenced DNA Library

library_name
GSM876642: Rag2.Pro-B.input [8149.8.301DTAAXX]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
2262329
Reads aligned (%)
89.5
Duplicates removed (%)
20.2
Number of peaks
88 (qval < 1E-05)

mm9

Number of total reads
2262329
Reads aligned (%)
89.3
Duplicates removed (%)
21.1
Number of peaks
111 (qval < 1E-05)

Base call quality data from DBCLS SRA