SRX120207
GSM876625: EBF1 ChIP-seq mature B [9842]; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ebf1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
FO B
genotype/variation
WT
strain
C57BL/6
chip antibody
anti EBF1 #0647 homemade
extraction method
Ex vivo (FACS sort)
tissue
Lymph Node

Sequenced DNA Library

library_name
GSM876625: EBF1 ChIP-seq mature B [9842]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24841891
Reads aligned (%)
86.9
Duplicates removed (%)
47.7
Number of peaks
698 (qval < 1E-05)

mm9

Number of total reads
24841891
Reads aligned (%)
86.6
Duplicates removed (%)
47.8
Number of peaks
776 (qval < 1E-05)

Base call quality data from DBCLS SRA