Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Embryo
Cell type
Hindlimb
MeSH Description
Either of two extremities of four-footed non-primate land animals. It usually consists of a FEMUR; TIBIA; and FIBULA; tarsals; METATARSALS; and TOES. (From Storer et al., General Zoology, 6th ed, p73)

Attributes by original data submitter

Sample

source_name
embryonic hindlimb bud
strain
C57BL/6J
tissue
hindlimb bud
developmental stage
gestational day E11.5
method
ChIP-seq
chip antibody
anti-H3K27ac
antibody vendor
Abcam
sequencing run type
Paired-end 75 multiplexed

Sequenced DNA Library

library_name
GSM875387: E11.5_hindlimb_H3K27ac_ChIP_seq_index7_mate
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
47168221
Reads aligned (%)
96.5
Duplicates removed (%)
8.5
Number of peaks
17202 (qval < 1E-05)

mm9

Number of total reads
47168221
Reads aligned (%)
96.4
Duplicates removed (%)
8.5
Number of peaks
17171 (qval < 1E-05)

Base call quality data from DBCLS SRA